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FileNotFoundException on Dependencies

I am evaluating DocumentX for my organization.  We are wanting to generate documentation for the API of our project as well as provide other help topics (like How tos and so forth).  When I attempt to Add .Net Assemblies and direct it at our assemblies I get an error message showing a chain of exceptions with the root or initial exception being FileNotFound.  Each time I get this the assembly listed as not being found is a 3rd part DLL.  EntityFramework, Prism, Log4Net.

The directory in which our DLLs are located also has all of the DLLs for this 3rd party stuff.

Any ideas on how to work around this?  As it stands now, DocumentX looks really great on paper, but I'm unable to show that it would work in our seemingly common scenario.  Any help would be greatly appreciated.

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